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  • 2024

    Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny

    Hunt, M., Hinrichs, A. S., Anderson, D., Karim, L., Dearlove, B. L., Knaggs, J., Constantinides, B., Fowler, P. W., Rodger, G., Street, T., Lumley, S., Webster, H., Sanderson, T., Ruis, C., de Maio, N., Amenga-Etego, L. N., Amuzu, D. S. Y., Avaro, M., Awandare, G. A., Ayivor-Djanie, R., & 76 othersBashton, M., Batty, E. M., Bediako, Y., De Belder, D., Benedetti, E., Bergthaler, A., Boers, S. A., Campos, J., Carr, R. A. A., Cuba, F., Dattero, M. E., Dejnirattisai, W., Dilthey, A., Duedu, K. O., Endler, L., Engelmann, I., Francisco, N. M., Fuchs, J., Gnimpieba, E. Z., Groc, S., Gyamfi, J., Heemskerk, D., Houwaart, T., Hsiao, N-Y., Huska, M., Hölzer, M., Iranzadeh, A., Jarva, H., Jeewandara, C., Jolly, B., Joseph, R., Kant, R., Ki, K. K. K., Kurkela, S., Lappalainen, M., Lataretu, M., Liu, C., Malavige, G. N., Mashe, T., Mongkolsapaya, J., Montes, B., Mora, J. A. M., Morang’a, C. M., Mvula, B., Nagarajan, N., Nelson, A., Ngoi, J. M., da Paixão, J. P., Panning, M., Poklepovich, T., Quashie, P. K., Ranasinghe, D., Russo, M., San, J. E., Sanderson, N. D., Scaria, V., Screaton, G., Sironen, T., Sisay, A., Smith, D., Smura, T., Supasa, P., Suphavilai, C., Swann, J., Tegally, H., Tegomoh, B., Vapalahti, O., Walker, A., Wilkinson, R. J., Williamson, C., de Oliveira, T., Peto, T. E. A., Crook, D., Corbett-Detig, R., Iqbal, Z. & IMSSC2 Laboratory Network Consortium, 30 Apr 2024, (Submitted) bioRxiv, p. 1-35, 35 p.

    Research output: Working paperPreprint

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  • 2021

    Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission

    The COVID-19 Genomics UK (COG-UK) Consortium, Aggarwal, D., Warne, B., Jahun, A., Hamilton, W., Fieldman, T., Plessis, L., Hill, V., Blane, B., Watkins, E., Wright, E., Hall, G., Ludden, C., Myers, R., Hosmillo, M., Goodfellow, Y., Pinckert, M., Georgana, I., Izuagbe, R., Leek, D., & 25 othersNsonwu, O., Hughes, G., Packer, S., Page, A., Metaxaki, M., Fuller, S., Weale, G., Holgate, J., Howes, R., McFarlane, D., Dougan, G., Pybus, O., Angelis, D. D., Maxwell, P., Peacock, S., Weekes, M., Illingworth, C., Harrison, E., Matheson, N., Goodfellow, I. G., Bashton, M., Smith, D., Nelson, A., Young, G. & McCann, C., 19 May 2021, (Submitted) 25 p.

    Research output: Working paperPreprint

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    30 Downloads (Pure)
  • Model design for non-parametric phylodynamic inference and applications to pathogen surveillance

    The COVID-19 Genomics UK (COG-UK) Consortium, Didelot, X., Geidelberg, L., Volz, E. M., Bashton, M., Smith, D., Nelson, A. & Young, G. R., 16 Aug 2021, Cold Spring Harbor Laboratory Press, (bioRxiv).

    Research output: Working paperPreprint

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    14 Downloads (Pure)