Search results

• 2023

  A self-monitoring wellbeing screening methodology for keyworkers, ‘My Personal Wellbeing’, using an integrative wellbeing model

  Elvin, G., Kurt, Z., Kennedy, A., Sice, P., Walton, L. & Patel, P., 14 Mar 2023, In: BMC Health Services Research. 23, 1, 9 p., 250.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  4 Downloads (Pure)

• Integrative Multiomics to Dissect the Lung Transcriptional Landscape of Pulmonary Arterial Hypertension

  Hong, J., Wong, B., Rhodes, C. J., Kurt, Z., Schwantes-An, T-H., Mickler, E. A., Gräf, S., Eyries, M., Lutz, K. A., Pauciulo, M. W., Trembath, R. C., Montani, D., Morrell, N. W., Wilkins, M. R., Nichols, W. C., Trégouët, D-A., Aldred, M. A., Desai, A. A., Tuder, R. M., Geraci, M. W., & 3 othersEghbali, M., Stearman, R. S. & Yang, X., 16 Jan 2023, (Submitted) Cold Spring Harbor, US: bioRxiv, 63 p.

  Research output: Working paper › Preprint

  File

  • Wnt Signaling 100%
  • Riociguat 100%
  • Gene Co-Expression Network 100%
  • Genetic Risk 100%
  • BMPR2 100%
  4 Downloads (Pure)
• 2022

  A Pilot Study on the Impacts of Lung-Strengthening Qigong on Wellbeing

  Kurt, Z., Sice, P., Krajewska, K., Elvin, G., Xie, H., Ogwu, S., Wang, P. & Turgut, S. S., 1 Dec 2022, In: Complementary Therapies in Medicine. 71, 16 p., 102891.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Practitioners 100%
  • Wellbeing 55%
  • Groups 44%
  • Qualitative 33%
  • Questionnaires 33%
  6 Downloads (Pure)

• Bioinformatics Analysis of the Potentially Functional circRNA-miRNA-mRNA Network in Breast Cancer

  Erdoğan, C., Suer, İ., Kaya, M., Kurt, Z., Öztürk, Ş. & Aydin, N., 11 Jan 2022, (Submitted).

  Research output: Working paper › Preprint

  • Bioinformatics Software 100%

• Correction: Refining colorectal cancer classification and clinical stratification through a single-cell atlas

  Khaliq, A. M., Erdogan, C., Kurt, Z., Turgut, S. S., Grunvald, M. W., Rand, T., Khare, S., Borgia, J. A., Hayden, D. M., Pappas, S. G., Govekar, H. R., Kam, A. E., Reiser, J., Turaga, K., Radovich, M., Zang, Y., Qiu, Y., Liu, Y., Fishel, M. L., Turk, A., & 11 othersGupta, V., Al-Sabti, R., Subramanian, J., Kuzel, T. M., Sadanandam, A., Waldron, L., Hussain, A., Saleem, M., El-Rayes, B., Salahudeen, A. & Masood, A., 13 Jul 2022, In: Genome biology. 23, 1, 1 p., 156.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  File

  • Cells 100%
  • Cancer Classification 100%
  • Colorectal Cancer 100%
  • Atlas 100%
  2 Downloads (Pure)

• Is the use of deep learning an appropriate means to locate debris in the ocean without harming aquatic wildlife?

  Moorton, Z., Kurt, Z. & Woo, W. L., 1 Aug 2022, In: Marine Pollution Bulletin. 181, p. 1-7 7 p., 113853.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Deep Learning 100%
  • Neural Network 50%
  • Artificial Intelligence 50%
  • Engineering Process 50%
  • Industry 50%
  2 Citations (Scopus)

  19 Downloads (Pure)

• Refining colorectal cancer classification and clinical stratification through a single-cell atlas

  Khaliq, A. M., Erdoğan, C., Kurt, Z., Turgut, S. S., Grunvald, M. W., Rand, T., Khare, S., Borgia, J. A., Hayden, D. M., Pappas, S. G., Govekar, H. R., Kam, A. E., Reiser, J., Turaga, K., Radovich, M., Zang, Y., Qiu, Y., Liu, Y., Fishel, M. L., Turk, A., & 11 othersGupta, V., Al-Sabti, R., Subramanian, J., Kuzel, T. M., Sadanandam, A., Waldron, L., Hussain, A., Saleem, M., El-Rayes, B., Salahudeen, A. & Masood, A., 11 May 2022, In: Genome Biology. 23, 1, 30 p., 113.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Microsatellite Instability 100%
  • Epithelioma 100%
  • Immune Checkpoint Inhibitor 100%
  • Stroma Cell 100%
  • Cancer Classification 100%
  15 Citations (Scopus)

  3 Downloads (Pure)
• 2021

  Redefining tumor classification and clinical stratification through a colorectal cancer single-cell atlas

  Khaliq, A. M., Kurt, Z., Grunvald, M. W., Erdogan, C., Turgut, S. S., Rand, T., Khare, S., Borgia, J. A., Hayden, D. M., Pappas, S. G., Govekar, H. R., Bhama, A. R., Singh, A., Jacobson, R. A., Kam, A. E., Zloza, A., Reiser, J., Catenacci, D. V., Turaga, K., Radovich, M., & 9 othersThyparambil, S., Levy, M. A., Subramanian, J., Kuzel, T. M., Sadanandam, A., Hussain, A., El-Rayes, B., Salahudeen, A. & Masood, A., 7 Feb 2021, (Submitted) In: bioRxiv. 40 p., 429256.

  Research output: Contribution to journal › Article

  File

  • Clinical Trial Design 100%
  • Cancer Associated Fibroblast 100%
  • Tumor Classification 50%
  • Small Cytoplasmic RNA 50%
  5 Downloads (Pure)

• The impact of Lung-Strengthening Qigong on wellbeing: a case study

  Kurt, Z., Sice, P., Krajewska, K., Elvin, G., Xie, H., Ogwu, S., Wang, P. & Turgut, S. S., 29 Nov 2021, (Submitted).

  Research output: Working paper › Preprint

  • Practitioners 100%
  • Groups 62%
  • Wellbeing 50%
  • Qualitative 37%
  • Questionnaires 37%

• Transcription Factor MAFF (MAF Basic Leucine Zipper Transcription Factor F) Regulates an Atherosclerosis Relevant Network Connecting Inflammation and Cholesterol Metabolism

  von Scheidt, M., Zhao, Y., de Aguiar Vallim, T. Q., Che, N., Wierer, M., Seldin, M. M., Franzén, O., Kurt, Z., Pang, S., Bongiovanni, D., Yamamoto, M., Edwards, P. A., Ruusalepp, A., Kovacic, J. C., Mann, M., Björkegren, J. L. M., Lusis, A. J., Yang, X. & Schunkert, H., 4 May 2021, In: Circulation. 143, 18, p. 1809-1823 15 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • LDL Receptor 100%
  • Basic Leucine Zipper Transcription Factor 33%
  • Knockout Model 16%
  • Liver Cell 16%
  • BTB-POZ Domain 16%
  20 Citations (Scopus)

  5 Downloads (Pure)
• 2019

  1812-P: Multitissue Single-Cell Analysis Reveals Differential Tissue, Cellular, and Molecular Sensitivity between Fructose and High-Fat Diets

  Arneson, D., Majid, S., Ahn, I. S., Kurt, Z., Diamante, G., Zhang, G., Gómez-Pinilla, F. & Yang, X., 4 Jun 2019, In: Diabetes. 68, Supplement 1, p. 1812-P

  Research output: Contribution to journal › Meeting Abstract › peer-review

  • High-Fructose Diet 100%
  • Fructose 66%
  • Chow Diet 33%
• 2018

  Abstract 468: Cross-species Comparison of Genetic Networks of Coronary Artery Disease

  Kurt, Z., Barrere-Cain, R. E., Sun, C., Zhao, Y., Pan, C., Ruusalepp, A., Franzén, O., Koplev, S., Bjorkegren, J. L., Lusis, A. J. & Yang, X., May 2018.

  Research output: Contribution to conference › Abstract › peer-review

• Integration of Multi-omics Data from Mouse Diversity Panel Highlights Mitochondrial Dysfunction in Non-alcoholic Fatty Liver Disease

  Chella Krishnan, K., Kurt, Z., Barrere-Cain, R., Sabir, S., Das, A., Floyd, R., Vergnes, L., Zhao, Y., Che, N., Charugundla, S., Qi, H., Zhou, Z., Meng, Y., Pan, C., Seldin, M. M., Norheim, F., Hui, S., Reue, K., Lusis, A. J. & Yang, X., 24 Jan 2018, In: Cell Systems. 6, 1, p. 103-115.e7 21 p.

  Research output: Contribution to journal › Article › peer-review

  • Non-Alcoholic Fatty Liver Disease 100%
  • Hybrid Mouse Strain 12%
  • Bioenergy 12%
  • Liver Tissue 12%
  • Mitochondrial Respiration 12%
  85 Citations (Scopus)

• The Genetic Architecture of Diet-Induced Hepatic Fibrosis in Mice

  Hui, S. T., Kurt, Z., Tuominen, I., Norheim, F., C.Davis, R., Pan, C., Dirks, D. L., Magyar, C. E., French, S. W., Chella Krishnan, K., Sabir, S., Campos-Pérez, F., Méndez-Sánchez, N., Macías-Kauffer, L., León-Mimila, P., Canizales-Quinteros, S., Yang, X., Beaven, S. W., Huertas-Vazquez, A. & Lusis, A. J., 8 Nov 2018, In: Hepatology. 68, 6, p. 2182-2196 15 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Cholesteryl Ester 100%
  • Genetic Architecture 100%
  • Inbred Mouse Strain 100%
  39 Citations (Scopus)

  13 Downloads (Pure)

• The Memory of Environmental Chemical Exposure in C. elegans Is Dependent on the Jumonji Demethylases jmjd-2 and jmjd-3/utx-1

  Camacho, J., Truong, L., Kurt, Z., Chen, Y. W., Morselli, M., Gutierrez, G., Pellegrini, M., Yang, X. & Allard, P., 22 May 2018, In: Cell Reports. 23, 8, p. 2392-2404 13 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Derepression 100%
  33 Citations (Scopus)

  3 Downloads (Pure)

• Tissue-specific pathways and networks underlying sexual dimorphism in non-alcoholic fatty liver disease 06 Biological Sciences 0604 Genetics

  Kurt, Z., Barrere-Cain, R., Laguardia, J., Mehrabian, M., Pan, C., Hui, S. T., Norheim, F., Zhou, Z., Hasin, Y., Lusis, A. J. & Yang, X., 22 Oct 2018, In: Biology of Sex Differences. 9, 1, 46.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Genetic Process 100%
  • Hybrid Mouse Strain 100%
  • Insulin Signaling 50%
  • Gonadectomy 50%
  • Lysophospholipid 50%
  47 Citations (Scopus)

  44 Downloads (Pure)
• 2017

  Aǧ Çikarim Algoritmalarindaki İlişki Tahmincilerinin Meme Kanseri Proteomik Verileri Üzerinde İncelenmesi

  Translated title of the contribution: Investigation of association estimators in network inference algorithms on breast cancer proteomic dataErdogan, C., Kurt, Z. & Diri, B., 27 Jun 2017, 2017 25th Signal Processing and Communications Applications Conference, SIU 2017. Institute of Electrical and Electronics Engineers Inc., 7960670. (2017 25th Signal Processing and Communications Applications Conference, SIU 2017).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Breast Cancer 100%
  • Diseases 66%
  • Procedures 66%
  • Malignant Neoplasm 66%
  • Psychiatrist 66%

• Applications and Limitations of Mouse Models for Understanding Human Atherosclerosis

  von Scheidt, M., Zhao, Y., Kurt, Z., Pan, C., Zeng, L., Yang, X., Schunkert, H. & Lusis, A. J., 7 Feb 2017, In: Cell Metabolism. 25, 2, p. 248-261 14 p.

  Research output: Contribution to journal › Review article › peer-review

  • Mouse 100%
  • Nested Gene 100%
  • Mouse Model 100%
  • Genome-Wide Association Study 100%
  • Comprehension 50%
  115 Citations (Scopus)

• Estimation of the proteomic cancer co-expression sub networks by using association estimators

  Erdoğan, C., Kurt, Z. & Diri, B., 16 Nov 2017, In: PLoS One. 12, 11, p. e0188016

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Protein 100%
  • Spearman Correlation 33%
  • Pearson Correlation 33%
  • Gold Standard 33%
  • Disease Association 33%
  1 Citation (Scopus)

  6 Downloads (Pure)

• Shared genetic regulatory networks for cardiovascular disease and type 2 diabetes in multiple populations of diverse ethnicities in the United States

  Cardiogenics Consortium, 28 Sep 2017, In: PLoS Genetics. 13, 9, p. e1007040

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Genome Wide Association Study 100%
  • Expression Quantitative Trait Locus 50%
  • Insulin-Like Growth Factor 1 50%
  • Gene Knockout 50%
  • Expression Quantitative Trait Loci 50%
  52 Citations (Scopus)

  3 Downloads (Pure)
• 2016

  Comprehensive review of association estimators for the inference of gene networks

  Kurt, Z., Aydin, N. & Altay, G., 23 Mar 2016, In: Turkish Journal of Electrical Engineering and Computer Sciences. 24, 3, p. 695-U1401

  Research output: Contribution to journal › Review article › peer-review
  6 Citations (Scopus)

• Mergeomics: integration of diverse genomics resources to identify pathogenic perturbations to biological systems

  Shu, L., Zhao, Y., Kurt, Z., Byars, S. G., Tukiainen, T., Kettunen, J., Ripatti, S., Zhang, B., Inouye, M., Makinen, V-P. & Yang, X., 7 Jan 2016

  Research output: Other contribution › peer-review

  File

  • Nested Gene 100%
  • Gene Interaction 66%
  • Electric Potential 33%
  • Species 33%
  • Association 33%
  2 Downloads (Pure)

• Mergeomics: Multidimensional data integration to identify pathogenic perturbations to biological systems

  Shu, L., Zhao, Y., Kurt, Z., Byars, S. G., Tukiainen, T., Kettunen, J., Orozco, L. D., Pellegrini, M., Lusis, A. J., Ripatti, S., Zhang, B., Inouye, M., Mäkinen, V. P. & Yang, X., 4 Nov 2016, In: BMC Genomics. 17, 1, 874.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Data Type 100%
  • Species 100%
  • Data Integration 66%
  • Multidimensional Data 66%
  • Biological Phenomena and Functions Concerning the Entire Organism 66%
  67 Citations (Scopus)
• 2015

  Structural Analysis of Treatment Cycles Representing Transitions between Nursing Organizational Units Inferred from Diabetes

  Dehmer, M., Kurt, Z., Emmert-Streib, F., Them, C., Schulc, E. & Hofer, S., 1 Jun 2015, In: PLoS One. 10, 6

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  6 Downloads (Pure)
• 2014

  A comprehensive comparison of association estimators for gene network inference algorithms

  Kurt, Z., Aydin, N. & Altay, G., 1 Aug 2014, In: Bioinformatics. 30, 15, p. 2142-2149

  Research output: Contribution to journal › Article › peer-review
  13 Citations (Scopus)

• Netmes: Assessing Gene Network Inference Algorithms by Network-Based Measures

  Altay, G., Kurt, Z., Dehmer, M. & Emmert-Streib, F., 2014, In: Evolutionary Bioinformatics. 10, p. 1-9

  Research output: Contribution to journal › Article › peer-review
  1 Citation (Scopus)
• 2013

  Impacts of the different spline orders on the B-spline association estimator

  Kurt, Z., Aydin, N. & Altay, G., 1 Dec 2013, 13th IEEE International Conference on BioInformatics and BioEngineering, IEEE BIBE 2013. 6701663. (13th IEEE International Conference on BioInformatics and BioEngineering, IEEE BIBE 2013).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Splines 100%
  • Order 45%
  • Network Inference 36%
  • Interaction 27%
  • Algorithm 27%
• 2012

  Comparison of several classification algorithms for gender recognition from face images

  Sakarkaya, M., Yanbol, F. & Kurt, Z., 1 Oct 2012, INES 2012 - IEEE 16th International Conference on Intelligent Engineering Systems, Proceedings. p. 97-101 5 p. 6249810. (INES 2012 - IEEE 16th International Conference on Intelligent Engineering Systems, Proceedings).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Face 100%
  • Algorithm 75%
  • Recognition 75%
  • Algorithms 75%
  • Gender Recognition 75%
  14 Citations (Scopus)
• 2011

  Comparison of feature extraction and feature selection approaches to decide whether a face image belongs to a male or a female

  Basmaci, E. S., Kaymakcioglu, U. & Kurt, Z., 20 Apr 2011, 2011 IEEE 19th Signal Processing and Communications Applications Conference, SIU 2011. Piscataway, NJ: IEEE, p. 522-525 4 p. 5929702. (2011 IEEE 19th Signal Processing and Communications Applications Conference, SIU 2011).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Principal Component Analysis 100%
  • Face 75%
  • Hybrid 50%
  • Classification 50%
  • Support Vector Machine 50%
  13 Citations (Scopus)
• 2010

  Renkli resimlerin kayipli sikiştirilmasinda farkli renk uzaylarinin etkisi

  Translated title of the contribution: Lossy compression of color images based on color spacesBöke, S. B., Diri, B. & Yavuz, Z. K., 22 Apr 2010, SIU 2010 - IEEE 18th Signal Processing and Communications Applications Conference. Piscataway, NJ: IEEE, p. 609-612 4 p. 5653656. (SIU 2010 - IEEE 18th Signal Processing and Communications Applications Conference).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Colour 100%
  • Images 42%
  • Lossy Compression 42%
  • Coding 14%
  • Entropy 14%
  1 Citation (Scopus)

• Searching optimal sigma parameter in Radial Basis Kernel Support Vector Machine for classification of HIV sub-type viruses

  Kurt, Z. & Yavuz, O., 2010, SIGMAP 2010 - Proceedings of the International Conference on Signal Processing and Multimedia Applications. p. 163-166 4 p. (SIGMAP 2010 - Proceedings of the International Conference on Signal Processing and Multimedia Applications).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Virus 100%
  • Viruses 75%
  • Support Vector Machine 50%
  • Kernel 50%
  • Human Immunodeficiency Virus 50%
• 2009

  Genişletilmiş Kalman filtresi yöntemine dayali eş zamanli konum belirleme ve haritalama algoritmasi

  Translated title of the contribution: Simultaneous localization and mapping using extended Kalman filterYavuz, S., Kurt, Z. & Biçer, M. S., 9 Apr 2009, 2009 IEEE 17th Signal Processing and Communications Applications Conference, SIU 2009. Piscataway, NJ: Institute of Electrical and Electronics Engineers Inc., p. 700-703 4 p. 5136492. (2009 IEEE 17th Signal Processing and Communications Applications Conference, SIU 2009).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Localisation 100%
  • Extended Kalman Filter 100%
  • Maps 66%
  • Buildings 66%
  • Filter Method 66%
  4 Citations (Scopus)

• Linear discriminant analysis in Ottoman alphabet character recognition

  Kurt, Z., Turkmen, H. I. & Karsligil, M. E., 1 Dec 2009, Proceedings of the European Computing Conference. VOL.2 ed. p. 601-607 7 p. (Lecture Notes in Electrical Engineering; vol. 28 LNEE, no. VOL.2).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Linear Discriminant Analysis 100%
  • Discriminant Analysis 100%
  • Character Recognition 40%
  • Variations 40%
  • Images 40%
  4 Citations (Scopus)
• 2008

  A simultaneous localization and map building algorithm based on sequential Monte Carlo method

  Kurt, Z. & Yavuz, S., 20 Apr 2008, 2008 IEEE 16th Signal Processing, Communication and Applications Conference. Piscataway, NJ: Institute of Electrical and Electronics Engineers Inc., 4 p. 4632712

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Maps 100%
  • Buildings 100%
  • Localisation 100%
  • Algorithm 66%
  • Robot 33%
  1 Citation (Scopus)
• 2007

  DAA yöntemi̇ i̇le osmanlica karakter tanima

  Translated title of the contribution: Ottoman alphabet character recognition by LDAKurt, Z., Türkmen, H. I. & Karsligil, M. E., 11 Jun 2007, 2007 IEEE 15th Signal Processing and Communications Applications, SIU. Piscataway, NJ: Institute of Electrical and Electronics Engineers Inc., 4 p. 4298685. (2007 IEEE 15th Signal Processing and Communications Applications, SIU).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Class 100%
  • Classes 100%
  • Discriminant Analysis 80%
  • Linear Discriminant Analysis 80%
  • Feature 40%

• Global feature based female facial beauty decision system

  Türkmen, H. I., Kurt, Z. & Karsligil, M. E., 1 Dec 2007, 15th European Signal Processing Conference, EUSIPCO 2007 - Proceedings. p. 1945-1949 5 p. (European Signal Processing Conference).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Decision 100%
  • Woman 75%
  • Principal Components Analysis 75%
  • Principal Component Analysis 75%
  • Female 75%
  10 Citations (Scopus)

• Türk i̇şaret dili yüz i̇fadesi ve baş hareketi veritabani

  Translated title of the contribution: A database of non-manual signs in turkish sign languageAran, O., Ari, I., Güvensan, A., Haberdar, H., Kurt, Z., Türkmen, I., Uyar, A. & Akarun, L., 11 Jun 2007, 2007 IEEE 15th Signal Processing and Communications Applications, SIU. Piscataway, NJ: Institute of Electrical and Electronics Engineers Inc., 4 p. 4298708. (2007 IEEE 15th Signal Processing and Communications Applications, SIU).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Manual Gesture 100%
  26 Citations (Scopus)
• 2006

  Destek vektör maki̇nesi̇ yöntemi̇ i̇le yüz güzelli̇ǧi̇ karari

  Türkmen, H. I., Kurt, Z. & Karsligil, M. E., 17 Apr 2006, 2006 IEEE 14th Signal Processing and Communications Applications Conference. Piscataway, NJ: Institute of Electrical and Electronics Engineers Inc., 1659754. (2006 IEEE 14th Signal Processing and Communications Applications Conference; vol. 2006).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review