Complete genome of Arthrobacter alpinus strain R3.8, bioremediation potential unraveled with genomic analysis

Wah-Seng See-Too; Robson Ee; Yan-Lue Lim; Peter Convey; David Pearce; Taznim Begam Mohd Mohidin; Wai-Fong Yin; Kok Gan Chan

doi:10.1186/s40793-017-0264-0

Complete genome of Arthrobacter alpinus strain R3.8, bioremediation potential unraveled with genomic analysis

Wah-Seng See-Too, Robson Ee, Yan-Lue Lim, Peter Convey, David Pearce, Taznim Begam Mohd Mohidin, Wai-Fong Yin, Kok Gan Chan

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Abstract

Arthrobacter alpinus R3.8 is a psychrotolerant bacterial strain isolated from a soil sample obtained at Rothera Point, Adelaide Island, close to the Antarctic Peninsula. Strain R3.8 was sequenced in order to help discover potential cold active enzymes with biotechnological applications. Genome analysis identified various cold adaptation genes including some coding for anti-freeze proteins and cold-shock proteins, genes involved in bioremediation of xenobiotic compounds including naphthalene, and genes with chitinolytic and N-acetylglucosamine utilization properties and also plant-growth-influencing properties. In this genome report, we present a complete genome sequence of A. alpinus strain R3.8 and its annotation data, which will facilitate exploitation of potential novel cold-active enzymes.

Original language	English
Pages (from-to)	52
Journal	Standards in Genomic Sciences
Volume	12
Issue number	1
DOIs	https://doi.org/10.1186/s40793-017-0264-0
Publication status	Published - 6 Sept 2017

Keywords

cold active enzymes
anti-freeze protein
Chitinase
Pyschrotolerant bacteria
plant growth promoting bacteria

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

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https://doi.org/10.1186/s40793-017-0264-0

Cite this

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title = "Complete genome of Arthrobacter alpinus strain R3.8, bioremediation potential unraveled with genomic analysis",

abstract = "Arthrobacter alpinus R3.8 is a psychrotolerant bacterial strain isolated from a soil sample obtained at Rothera Point, Adelaide Island, close to the Antarctic Peninsula. Strain R3.8 was sequenced in order to help discover potential cold active enzymes with biotechnological applications. Genome analysis identified various cold adaptation genes including some coding for anti-freeze proteins and cold-shock proteins, genes involved in bioremediation of xenobiotic compounds including naphthalene, and genes with chitinolytic and N-acetylglucosamine utilization properties and also plant-growth-influencing properties. In this genome report, we present a complete genome sequence of A. alpinus strain R3.8 and its annotation data, which will facilitate exploitation of potential novel cold-active enzymes.",

keywords = "cold active enzymes, anti-freeze protein, Chitinase, Pyschrotolerant bacteria, plant growth promoting bacteria",

author = "Wah-Seng See-Too and Robson Ee and Yan-Lue Lim and Peter Convey and David Pearce and Mohidin, \{Taznim Begam Mohd\} and Wai-Fong Yin and Chan, \{Kok Gan\}",

year = "2017",

month = sep,

day = "6",

doi = "10.1186/s40793-017-0264-0",

language = "English",

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journal = "Standards in Genomic Sciences",

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T1 - Complete genome of Arthrobacter alpinus strain R3.8, bioremediation potential unraveled with genomic analysis

AU - See-Too, Wah-Seng

AU - Ee, Robson

AU - Lim, Yan-Lue

AU - Convey, Peter

AU - Pearce, David

AU - Mohidin, Taznim Begam Mohd

AU - Yin, Wai-Fong

AU - Chan, Kok Gan

PY - 2017/9/6

Y1 - 2017/9/6

N2 - Arthrobacter alpinus R3.8 is a psychrotolerant bacterial strain isolated from a soil sample obtained at Rothera Point, Adelaide Island, close to the Antarctic Peninsula. Strain R3.8 was sequenced in order to help discover potential cold active enzymes with biotechnological applications. Genome analysis identified various cold adaptation genes including some coding for anti-freeze proteins and cold-shock proteins, genes involved in bioremediation of xenobiotic compounds including naphthalene, and genes with chitinolytic and N-acetylglucosamine utilization properties and also plant-growth-influencing properties. In this genome report, we present a complete genome sequence of A. alpinus strain R3.8 and its annotation data, which will facilitate exploitation of potential novel cold-active enzymes.

AB - Arthrobacter alpinus R3.8 is a psychrotolerant bacterial strain isolated from a soil sample obtained at Rothera Point, Adelaide Island, close to the Antarctic Peninsula. Strain R3.8 was sequenced in order to help discover potential cold active enzymes with biotechnological applications. Genome analysis identified various cold adaptation genes including some coding for anti-freeze proteins and cold-shock proteins, genes involved in bioremediation of xenobiotic compounds including naphthalene, and genes with chitinolytic and N-acetylglucosamine utilization properties and also plant-growth-influencing properties. In this genome report, we present a complete genome sequence of A. alpinus strain R3.8 and its annotation data, which will facilitate exploitation of potential novel cold-active enzymes.

KW - cold active enzymes

KW - anti-freeze protein

KW - Chitinase

KW - Pyschrotolerant bacteria

KW - plant growth promoting bacteria

UR - https://www.scopus.com/pages/publications/85028932961

U2 - 10.1186/s40793-017-0264-0

DO - 10.1186/s40793-017-0264-0

M3 - Article

SN - 1944-3277

VL - 12

SP - 52

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

IS - 1

ER -

Complete genome of Arthrobacter alpinus strain R3.8, bioremediation potential unraveled with genomic analysis

Abstract

Keywords

UN SDGs

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