TY - JOUR
T1 - Complete integrability of information processing by biochemical reactions
AU - Agliari, Elena
AU - Barra, Adriano
AU - Dello Schiavo, Lorenzo
AU - Moro, Antonio
PY - 2016/11/4
Y1 - 2016/11/4
N2 - Statistical mechanics provides an effective framework to investigate information processing in biochemical reactions. Within such framework far-reaching analogies are established among (anti-)cooperative collective behaviors in chemical kinetics, (anti-)ferromagnetic spin models in statistical mechanics and operational amplifiers/flip-flops in cybernetics.
The underlying modeling -- based on spin systems -- has been proved to be accurate for a wide class of systems matching classical (e.g. Michaelis--Menten, Hill, Adair) scenarios in the infinite-size approximation.
However, the current research in biochemical information processing has been focusing on systems involving a relatively small number of units, where this approximation is no longer valid.
Here we show that the whole statistical mechanical description of reaction kinetics can be re-formulated via a mechanical analogy -- based on completely integrable hydrodynamic-type systems of PDEs -- which provides explicit finite-size solutions, matching recently investigated phenomena (e.g. noise-induced cooperativity, stochastic bi-stability, quorum sensing).
The resulting picture, successfully tested against a broad spectrum of data, constitutes a neat rationale for a numerically effective and theoretically consistent description of collective behaviors in biochemical reactions.
AB - Statistical mechanics provides an effective framework to investigate information processing in biochemical reactions. Within such framework far-reaching analogies are established among (anti-)cooperative collective behaviors in chemical kinetics, (anti-)ferromagnetic spin models in statistical mechanics and operational amplifiers/flip-flops in cybernetics.
The underlying modeling -- based on spin systems -- has been proved to be accurate for a wide class of systems matching classical (e.g. Michaelis--Menten, Hill, Adair) scenarios in the infinite-size approximation.
However, the current research in biochemical information processing has been focusing on systems involving a relatively small number of units, where this approximation is no longer valid.
Here we show that the whole statistical mechanical description of reaction kinetics can be re-formulated via a mechanical analogy -- based on completely integrable hydrodynamic-type systems of PDEs -- which provides explicit finite-size solutions, matching recently investigated phenomena (e.g. noise-induced cooperativity, stochastic bi-stability, quorum sensing).
The resulting picture, successfully tested against a broad spectrum of data, constitutes a neat rationale for a numerically effective and theoretically consistent description of collective behaviors in biochemical reactions.
UR - https://www.scopus.com/pages/publications/84994577823
U2 - 10.1038/srep36314
DO - 10.1038/srep36314
M3 - Article
SN - 2045-2322
VL - 6
SP - 36314
JO - Scientific Reports
JF - Scientific Reports
ER -