TY - JOUR
T1 - Non-parametric physiological classification of retinal ganglion cells in the mouse retina
AU - Jouty, Jonathan
AU - Hilgen, Gerrit
AU - Sernagor, Evelyne
AU - Hennig, Matthias H.
PY - 2018/12/7
Y1 - 2018/12/7
N2 - Retinal ganglion cells, the sole output neurons of the retina, exhibit surprising diversity. A recent study reported over 30 distinct types in the mouse retina, indicating that the processing of visual information is highly parallelised in the brain. The advent of high density multi-electrode arrays now enables recording from many hundreds to thousands of neurons from a single retina. Here we describe a method for the automatic classification of large-scale retinal recordings using a simple stimulus paradigm and a spike train distance measure as a clustering metric. We evaluate our approach using synthetic spike trains, and demonstrate that major known cell types are identified in high-density recording sessions from the mouse retina with around 1,000 retinal ganglion cells. A comparison across different retinas reveals substantial variability between preparations, suggesting pooling data across retinas should be approached with caution. As a parameter-free method, our approach is broadly applicable for cellular physiological classification in all sensory modalities.
AB - Retinal ganglion cells, the sole output neurons of the retina, exhibit surprising diversity. A recent study reported over 30 distinct types in the mouse retina, indicating that the processing of visual information is highly parallelised in the brain. The advent of high density multi-electrode arrays now enables recording from many hundreds to thousands of neurons from a single retina. Here we describe a method for the automatic classification of large-scale retinal recordings using a simple stimulus paradigm and a spike train distance measure as a clustering metric. We evaluate our approach using synthetic spike trains, and demonstrate that major known cell types are identified in high-density recording sessions from the mouse retina with around 1,000 retinal ganglion cells. A comparison across different retinas reveals substantial variability between preparations, suggesting pooling data across retinas should be approached with caution. As a parameter-free method, our approach is broadly applicable for cellular physiological classification in all sensory modalities.
KW - Classification
KW - Light responses
KW - Multi-electrode array
KW - Retinal ganglion cells
KW - Spike distance
UR - http://www.scopus.com/inward/record.url?scp=85059009749&partnerID=8YFLogxK
U2 - 10.3389/fncel.2018.00481
DO - 10.3389/fncel.2018.00481
M3 - Article
AN - SCOPUS:85059009749
SN - 1662-5102
VL - 12
JO - Frontiers in Cellular Neuroscience
JF - Frontiers in Cellular Neuroscience
M1 - 481
ER -