PROCOGNATE: a cognate ligand domain mapping for enzymes

Matthew Bashton; Irene Nobeli; Janet M Thornton

doi:10.1093/nar/gkm611

PROCOGNATE: a cognate ligand domain mapping for enzymes

Matthew Bashton, Irene Nobeli, Janet M Thornton

Research output: Contribution to journal › Article › peer-review

36 Citations (Scopus)

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Abstract

PROCOGNATE is a database of protein cognate ligands for the domains in enzyme structures as described by CATH, SCOP and Pfam, and is available as an interactive website or a flat file. This article gives an overview of the database and its generation and presents a new website front end, as well as recent increased coverage in our dataset via inclusion of Pfam domains. We also describe navigation of the website and its features. The current version (1.3) of PROCOGNATE covers 4123, 4536, 5876 structures and 377, 326, 695 superfamilies/families in CATH, SCOP and Pfam, respectively. PROCOGNATE can be accessed at: http://www.ebi.ac.uk/thornton-srv/databases/procognate/

Original language	English
Pages (from-to)	D618-22
Number of pages	5
Journal	Nucleic Acids Research
Volume	36
Issue number	Supplement 1
Early online date	24 Aug 2007
DOIs	https://doi.org/10.1093/nar/gkm611
Publication status	Published - 1 Jan 2008
Externally published	Yes

Keywords

Binding Sites
Databases, Protein
Enzymes/chemistry
Internet
Ligands
Protein Structure, Tertiary
User-Computer Interface

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10.1093/nar/gkm611Licence: CC BY-NC

gkm611Final published version, 2.51 MBLicence: CC BY-NC

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title = "PROCOGNATE: a cognate ligand domain mapping for enzymes",

abstract = "PROCOGNATE is a database of protein cognate ligands for the domains in enzyme structures as described by CATH, SCOP and Pfam, and is available as an interactive website or a flat file. This article gives an overview of the database and its generation and presents a new website front end, as well as recent increased coverage in our dataset via inclusion of Pfam domains. We also describe navigation of the website and its features. The current version (1.3) of PROCOGNATE covers 4123, 4536, 5876 structures and 377, 326, 695 superfamilies/families in CATH, SCOP and Pfam, respectively. PROCOGNATE can be accessed at: http://www.ebi.ac.uk/thornton-srv/databases/procognate/",

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doi = "10.1093/nar/gkm611",

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AU - Nobeli, Irene

AU - Thornton, Janet M

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KW - Binding Sites

KW - Databases, Protein

KW - Enzymes/chemistry

KW - Internet

KW - Ligands

KW - Protein Structure, Tertiary

KW - User-Computer Interface

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DO - 10.1093/nar/gkm611

M3 - Article

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SP - D618-22

JO - Nucleic Acids Research

JF - Nucleic Acids Research

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PROCOGNATE: a cognate ligand domain mapping for enzymes

Abstract

Keywords

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