PROCOGNATE: a cognate ligand domain mapping for enzymes

Matthew Bashton, Irene Nobeli, Janet M Thornton

Research output: Contribution to journalArticlepeer-review

33 Citations (Scopus)
11 Downloads (Pure)

Abstract

PROCOGNATE is a database of protein cognate ligands for the domains in enzyme structures as described by CATH, SCOP and Pfam, and is available as an interactive website or a flat file. This article gives an overview of the database and its generation and presents a new website front end, as well as recent increased coverage in our dataset via inclusion of Pfam domains. We also describe navigation of the website and its features. The current version (1.3) of PROCOGNATE covers 4123, 4536, 5876 structures and 377, 326, 695 superfamilies/families in CATH, SCOP and Pfam, respectively. PROCOGNATE can be accessed at: http://www.ebi.ac.uk/thornton-srv/databases/procognate/

Original languageEnglish
Pages (from-to)D618-22
Number of pages5
JournalNucleic Acids Research
Volume36
Issue numberSupplement 1
Early online date24 Aug 2007
DOIs
Publication statusPublished - 1 Jan 2008
Externally publishedYes

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