@techreport{d9acc5d52513481f8a620db392f34255,
title = "Shared and distinct pathways and networks genetically linked to coronary artery disease between human and mouse",
abstract = "Mouse models have been used extensively to study human coronary artery disease (CAD) and to test therapeutic targets. However, whether mouse and human share similar genetic factors and pathogenic mechanisms of CAD has not been thoroughly investigated in a data-driven manner. We conducted a cross-species comparison study to better understand CAD pathogenesis between species by leveraging multiomics data. Specifically, we compared genetically driven and thus CAD-causal gene networks and pathways, by using human GWAS of CAD from the CARDIoGRAMplusC4D consortium and mouse GWAS of atherosclerosis from the Hybrid Mouse Diversity Panel (HMDP) followed by integration with functional multiomics human (STARNET and GTEx) and mouse (HMDP) databases. We found that mouse and human shared >75% of CAD causal pathways. Based on network topology, we then predicted key regulatory genes for both the shared pathways and species-specific pathways, which were further validated through the use of single cell data and the latest CAD GWAS. In sum, our results should serve as a much-needed guidance for which human CAD-causal pathways can or cannot be further evaluated for novel CAD therapies using mouse models.",
author = "Zeyneb Kurt and Jenny Cheng and McQuillen, {Caden N} and Zara Saleem and Neil Hsu and Nuoya Jiang and Rio Barrere-Cain and Calvin Pan and Oscar Franzen and Simon Koplev and Susanna Wang and Johan Bjorkegren and Lusis, {Aldons J} and Montgomery Blencowe and Xia Yang",
note = "Funding information: MB was supported by the AHA Predoctoral Fellowship (829009) and UCLA IBP Hyde Fellowship. ZK was supported by AHA Postdoctoral Fellowship (17POST33670739) and UCLA Iris Cantor, XY is supported by NIH R01 HL147883, DK117850, AJL is supported by NIH R01 DK117850. JB acknowledges support from the Swedish Research Council (2018-02529 and 2022-00734), the Swedish Heart Lung Foundation (2017-0265 and 2020-0207), the Leducq Foundation AteroGen (22CVD04) and PlaqOmics (18CVD02) consortia; the National Institute of Health-National Heart Lung Blood Institute (NIH/NHLBI, R01HL164577; R01HL148167; R01HL148239, R01HL166428, and R01HL168174), American Heart Association Transformational Project Award 19TPA34910021, and from the CMD AMP fNIH program.",
year = "2023",
month = aug,
day = "10",
doi = "10.7554/eLife.88266.1",
language = "English",
series = "Computational and Systems Biology",
publisher = "eLife Sciences Publications Ltd.",
number = "RP88266",
pages = "1--36",
address = "United Kingdom",
type = "WorkingPaper",
institution = "eLife Sciences Publications Ltd.",
}